PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G064600.1
Common NamePHAVU_001G064600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 247aa    MW: 27025.7 Da    PI: 7.8214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G064600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-191862348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         W ++Ed++l+++v+q+G+ +W++Ia+++  gRt+k+c++rw+++l
  Phvul.001G064600.1 18 HWKEDEDQKLIQLVQQHGPQHWNAIAQHIH-GRTGKSCRLRWRNHL 62
                        6*****************************.*************97 PP
2Myb_DNA-binding46.96.5e-1568112147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+++++eE+e+l+ a + +G++ W+tIa+ +  gRt++ +k++w+ +
  Phvul.001G064600.1  68 RNPFSKEEEERLIAAREFYGSK-WATIAKLFF-GRTDNALKNHWHVL 112
                         789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5031166IPR017930Myb domain
SuperFamilySSF466897.7E-2914109IPR009057Homeodomain-like
SMARTSM007174.5E-161564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-261870IPR009057Homeodomain-like
CDDcd001673.86E-161962No hitNo description
PfamPF139219.5E-211979No hitNo description
PROSITE profilePS5129415.79667117IPR017930Myb domain
SMARTSM007171.6E-1267115IPR001005SANT/Myb domain
CDDcd001671.50E-1070112No hitNo description
Gene3DG3DSA:1.10.10.605.9E-1771116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDNSTAASEN LPHHRANHWK EDEDQKLIQL VQQHGPQHWN AIAQHIHGRT GKSCRLRWRN  60
HLSPEVNRNP FSKEEEERLI AAREFYGSKW ATIAKLFFGR TDNALKNHWH VLTARKRKEA  120
NNGSLQELVN ASSSSSPCNI PRPHHNAFFH MRNFNAAQTA PAPVCSSASF SPANFGSVPS  180
FSESFPAAAA AAAAGGGGMM KKGLFHGSSS AEFEGSSSSE KNQAHDAGFK DATFYDFLGV  240
GADDDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-32191167104C-Myb DNA-Binding Domain
1msf_C2e-32191167104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G064600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150364e-91AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161388.10.0hypothetical protein PHAVU_001G064600g
TrEMBLV7CT690.0V7CT69_PHAVU; Uncharacterized protein
STRINGXP_007161388.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2020555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.16e-45myb domain protein 110