PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G073800.1
Common NamePHAVU_001G073800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 245aa    MW: 26835 Da    PI: 6.0347
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G073800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.6e-1951101155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Phvul.001G073800.1  51 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 101
                         68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-1351101IPR001471AP2/ERF domain
SMARTSM003801.8E-3652115IPR001471AP2/ERF domain
PROSITE profilePS5103223.4252109IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2152110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-3252110IPR001471AP2/ERF domain
PRINTSPR003672.5E-105364IPR001471AP2/ERF domain
CDDcd000181.63E-3153111No hitNo description
PRINTSPR003672.5E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MFIHALKPLT MRVSAQNNNS GKESSSTSPS EAAPPLESKT EKRNRESNKH PVYRGVRMRN  60
WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDVAALSIK GNSAILNFPE LAASLPRPVS  120
LAPRDVQAAA AKAAHMDFPP SSTSLSSSSL VSTTSSSSSL SSLVSTADLS TESEELSQII  180
ELPRLETSYE LGNEFVFADS QDTWMYQPPI PWLQTTYDAS HADDDIAVAE TGLVTTFKSF  240
LWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-19491091172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G073800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161494.11e-178hypothetical protein PHAVU_001G073800g
SwissprotQ9LYD32e-74DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLV7CVT31e-177V7CVT3_PHAVU; Uncharacterized protein
STRINGXP_007161494.11e-178(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-72ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]