PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G080800.1
Common NamePHAVU_001G080800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 356aa    MW: 39112.8 Da    PI: 9.3364
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G080800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.91.1e-38101160261
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         ke++l+cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s
  Phvul.001G080800.1 101 KEQSLNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRS 160
                         78999*****************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2898159IPR003851Zinc finger, Dof-type
PfamPF027012.9E-33103159IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.807105159IPR003851Zinc finger, Dof-type
PROSITE patternPS013610107143IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
KSIGFIHILL HSFLTFPFSA SSATSSQLKY KTYHHFSFFQ LHFTTPTFIL YSSSSSSISN  60
SMDTAQWPQE MVVKPIEDIV VVTNTCPKVA GAVERKPRPQ KEQSLNCPRC HSINTKFCYY  120
NNYSLTQPRY FCKTCRRYWT EGGSLRNIPV GGGSRKNKRS TFCSTPHRNS PDKKLSDLVI  180
TPPLSHSQNP KNNIIHQGQD LNLAFPATTS DFRNISELVQ QNNNNNSSNN MSASASSPSS  240
TTTTTTPTTS HLSALELLTG ITSTSTGLNS FMPVPVPADP NSVYTCGFPL QNFKPALNFS  300
LDGIGHGYAS LHNVQSGRLL FPFEDLKQVS TATTMDQKQQ GDSTGYWTGM FGGGS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G080800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161571.10.0hypothetical protein PHAVU_001G080800g, partial
SwissprotQ8LAP87e-57DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLV7CWA50.0V7CWA5_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007161571.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.15e-54Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]