PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G087300.1
Common NamePHAVU_001G087300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CO-like
Protein Properties Length: 370aa    MW: 41555.4 Da    PI: 7.2194
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G087300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.51.7e-05333535
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                         C+ +++k++ lfC+ ++  lC  C  + H 
  Phvul.001G087300.1  3 PCDYCHSKPALLFCRPDSAKLCLLCDHHVHT 33
                        7*************************99994 PP
2CCT62.81e-21322365144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R  a+lRYkeK+k+R+++K+irYesRKa+A++R+Rv+GrFvk++
  Phvul.001G087300.1 322 RGDAMLRYKEKKKSRRYDKHIRYESRKARADTRKRVRGRFVKAN 365
                         6789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.328146IPR000315B-box-type zinc finger
SMARTSM003367.8E-8146IPR000315B-box-type zinc finger
CDDcd000212.78E-6346No hitNo description
SMARTSM003364.84787IPR000315B-box-type zinc finger
PfamPF062039.0E-16322364IPR010402CCT domain
PROSITE profilePS5101714.813322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MLPCDYCHSK PALLFCRPDS AKLCLLCDHH VHTANALSLK HVRFQICANC DTAATVRCSA  60
HNLLLCHTCD LDAHANAPAS LHHRHRLHGF SGCPSLPEMA SALGLDLRPR HSNCRDEVYE  120
QVLEVARRRN ENEFLCAETG EFRFDSENDV VDEMLLQQTP FTSLLGMPDS QSEFDAAKSN  180
DNGYGGQAGD LHWSFDPNYQ SPQVWDFQLQ KSRGCDEPRV VTFDGLEVPK SFQDVHNMNY  240
STGDDILSRN NQSDQSSSSH AKKKEESNKE ARGGLSTESK LLESIPYSAT NNVVVMENLV  300
GGNANVSTLQ ARVSLEELAK NRGDAMLRYK EKKKSRRYDK HIRYESRKAR ADTRKRVRGR  360
FVKANEIQA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G087300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161652.10.0hypothetical protein PHAVU_001G087300g
TrEMBLV7CXP40.0V7CXP4_PHAVU; Uncharacterized protein
STRINGXP_007161652.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.19e-57B-box type zinc finger protein with CCT domain