PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G087900.1

Common Name

PHAVU_001G087900g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 177aa MW: 19593.3 Da PI: 8.7356

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G087900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H Phvul.001G087900.1 45 FQCHFCHRKFYTSQALGGHQNAH 67 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.31E-6	42	72	No hit	No description
PROSITE profile	PS50157	10.72	45	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	47	67	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MADPTAMYEF LKQPSNAGVK RPLPPPSTTA NITTTTNTAA TTRTFQCHFC HRKFYTSQAL 60 GGHQNAHKLE RAAARRQTNG LLPPPPLPLE PTLKPTETRP RPMLEPLEPT TGLFFHPPYW 120 LDMEPLQFQT THPYVTAATL PVPFHAASST VPQQQQVLSH NVDASDHVNI DLTLRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G087900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007161660.1	1e-126	hypothetical protein PHAVU_001G087900g
TrEMBL	V7CU65	1e-124	V7CU65_PHAVU; Uncharacterized protein
STRING	XP_007161660.1	1e-125	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16293	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	2e-13	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Phvul.001G087900.1
Entrez Gene	18640816