PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G091100.1
Common NamePHAVU_001G091100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 208aa    MW: 23563.9 Da    PI: 7.045
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G091100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.21.1e-29141391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp+G+rF+Ptde l  +yL+k++ +++l+  + i+++d++++ePw Lp    ++  +w  +fF   + ++  ++ ++r + +g W+   kd
  Phvul.001G091100.1  14 LPVGYRFDPTDEILAGYYLRKRIMAQPLPN-DLIQDCDVHQTEPWALPGG--GKYMNWhrFFFYDVR-THVFENPEKRDAGKGQWEVVEKD 100
                         799*************************99.99***************43..233466325555444.4455678899999********** PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +ev   ++ ++  k +Lv++k++ ++  kt+Wvmhe+rl
  Phvul.001G091100.1 101 QEVEFPDELVIAKKSVLVYWKAKGNSLAKTNWVMHEFRL 139
                         *****999999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-3311158IPR003441NAC domain
PROSITE profilePS5100534.52214159IPR003441NAC domain
PfamPF023652.5E-1615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEVLNPVEGK TYRLPVGYRF DPTDEILAGY YLRKRIMAQP LPNDLIQDCD VHQTEPWALP  60
GGGKYMNWHR FFFYDVRTHV FENPEKRDAG KGQWEVVEKD QEVEFPDELV IAKKSVLVYW  120
KAKGNSLAKT NWVMHEFRLA LKSHPSKMTG MAVCRIFETK RGKKAKGSEG VTSNRSNVEE  180
AMDVTPTVID FTVECGTETG PPPPGTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-171416017166NO APICAL MERISTEM PROTEIN
1ut4_B1e-171416017166NO APICAL MERISTEM PROTEIN
1ut7_A1e-171416017166NO APICAL MERISTEM PROTEIN
1ut7_B1e-171416017166NO APICAL MERISTEM PROTEIN
4dul_A1e-171416017166NAC domain-containing protein 19
4dul_B1e-171416017166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G091100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150376e-68AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161703.11e-155hypothetical protein PHAVU_001G091100g
TrEMBLV7CU581e-154V7CU58_PHAVU; Uncharacterized protein
STRINGXP_007161703.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.24e-27NAC domain containing protein 41