PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G093000.1

Common Name

PHAVU_001G093000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 255aa MW: 29178.1 Da PI: 9.6013

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G093000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	97	119	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Phvul.001G093000.1 97 SCSVCSRVYPTSRLLSIHVSEvH 119 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.28	69	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	71	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.1	96	119	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	98	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	7.9	134	159	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	136	159	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MAMKVEHNQN QQLGFPFWKP LRRRFGPDSP FFAPGNLERE LLAKQVALEL TEEKDQLEKW 60 MQEEEGREIF CPIVGCGARL TSMDDFENHY NARHTASCSV CSRVYPTSRL LSIHVSEVHD 120 SFFQAKVARG YDMYECLVER CGLKFKSYNR RHQHLVDKHK FPTSFEFFKK AKPSKKQRLK 180 SQHKKAVPKE DAAGMMEVEN AAVDDLVSAV SKLSTSDSTP SSISFGRRSK GLSFVPRTVR 240 HRDQSNSAES ETKR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G093000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095419	0.0	BT095419.1 Soybean clone JCVI-FLGm-14N2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007161722.1	0.0	hypothetical protein PHAVU_001G093000g
TrEMBL	V7CXV7	0.0	V7CXV7_PHAVU; Uncharacterized protein
STRING	XP_007161722.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9718	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-104	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	Phvul.001G093000.1
Entrez Gene	18640869