PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G106400.1
Common NamePHAVU_001G106400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 476aa    MW: 52006.5 Da    PI: 7.4849
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G106400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.2e-39102161261
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  Phvul.001G106400.1 102 PDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 161
                         7899******************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2988159IPR003851Zinc finger, Dof-type
PfamPF027013.7E-32104160IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.425106160IPR003851Zinc finger, Dof-type
PROSITE patternPS013610108144IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSETKKDPGI RLFGRKIPVP ECQIPANSGP TDACSSIKKA ELEMPSECGE NSEKQEKFCD  60
SRDSKQEFQH KVKENEPIVN PKPVEDNTEN GDSDQDKVLK KPDKILQCPR CNSLDTKFCY  120
FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LASQYRHIMV SNGIPTSRLQ  180
TEDTSGFQHV TSLESSVPFR SSADNNSTVL KFGPDTPLCE SMDSMLNLRD ERRCVDASSI  240
NRVEYAGEPS LCGSSVTNNG TQGNELSEHK TSNWLQCYPV PPWVLPYPGW NNVNSMEVVH  300
QSSAPMCSPY NTGPAAMQWC PTAMVAIPGM CPPSIPLQLV PPSCWSGTPL WNAGTGAVSI  360
GSNACLSPSS STSNSCCSGN GSPTLGKHAR DTVFADEEKS EKCVLVPKTI RIDASKSPIR  420
AALTIQHDQQ KSLSNGDILK KIEPKEGKDR ILGASQILEA NPAAISRAHA FQESI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G106400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161893.10.0hypothetical protein PHAVU_001G106400g
TrEMBLV7CUP40.0V7CUP4_PHAVU; Uncharacterized protein
STRINGXP_007161893.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-60cycling DOF factor 2