PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G106700.1
Common NamePHAVU_001G106700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WOX
Protein Properties Length: 281aa    MW: 30470.2 Da    PI: 7.274
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G106700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox482.1e-152383257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  Phvul.001G106700.1 23 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgTVGDANVFYWFQNRRSRSRR 83
                        89*****************99*************************************997 PP
2Wus_type_Homeobox107.21e-342285265
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
  Phvul.001G106700.1 22 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQ 85
                        589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-141790IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-91792IPR009057Homeodomain-like
PROSITE profilePS5007111.2721984IPR001356Homeobox domain
SMARTSM003891.8E-62188IPR001356Homeobox domain
PfamPF000464.0E-132383IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEDERQKEAK SPRHGPEKSE AVRSRWTPKP EQILILESIF NSGMVNPPKD ETVRIRKLLE  60
KFGTVGDANV FYWFQNRRSR SRRRQRQMMQ QQAAATAAAV NQPQPQPQPQ PQPHGLVGGG  120
AIQHDHHNQV NLVASESATS NMGLGSCVSY DLLGGSSSSS CSGGGQQGMA GFFSASSPQV  180
GFPEIIDHTS PASSLLFPPF DPNLSFQTGY GGTNISAFIT VFINGIATEL PKGPIDIKTV  240
FGEDVMLLHS SGVPILTNEF GFLMQNLQHG ESYFLVSKPT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G106700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-142AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161896.10.0hypothetical protein PHAVU_001G106700g
TrEMBLV7CX790.0V7CX79_PHAVU; Uncharacterized protein
STRINGXP_007161896.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.13e-31WUSCHEL related homeobox 11