PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G115200.1
Common NamePHAVU_001G115200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 224aa    MW: 24844.2 Da    PI: 9.5459
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G115200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.96.1e-37361371101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +CaaCk +r+kC++dC++apyf ++q +++f++vhk+FGa+n++kll +++  +r+++++s++yeA+ar+ +Pv+G+v++i++lqqq++ l
  Phvul.001G115200.1  36 PCAACKKMRKKCSSDCIFAPYFGSSQgSARFEAVHKVFGANNLSKLLLEVEVAHRNEVINSMCYEAQARLANPVHGCVSTISALQQQVAML 126
                         7*********************999989*************************************************************** PP

              DUF260  91 kaelallkeel 101
                         + el++++++l
  Phvul.001G115200.1 127 QGELVVVQNQL 137
                         *******9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.06535137IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3636134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTNPAQENVN EGTSSRANKQ KGKVSKRVRS RASSPPCAAC KKMRKKCSSD CIFAPYFGSS  60
QGSARFEAVH KVFGANNLSK LLLEVEVAHR NEVINSMCYE AQARLANPVH GCVSTISALQ  120
QQVAMLQGEL VVVQNQLINT KNLYESLLQR TYQYQQQPNI NVVMQPTQSN NLTPSTNSLM  180
NRSFFNPGFD NLAMQTTPST NNMEPRQFCG LPHFNNDITH LFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-293613911113LOB family transfactor Ramosa2.1
5ly0_B3e-293613911113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G115200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-120AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162000.11e-166hypothetical protein PHAVU_001G115200g
TrEMBLV7CV311e-164V7CV31_PHAVU; Uncharacterized protein
STRINGXP_007162000.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2850733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-47LOB domain-containing protein 20