PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G137500.1
Common NamePHAVU_001G137500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 615aa    MW: 68086.9 Da    PI: 4.7401
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G137500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.81.5e-09235285155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s ++GV++ +++ +W+A++         + +++lg++ tae+Aa+a++    kl+g
  Phvul.001G137500.1 235 SPFRGVYRVPTSRKWEARLGReG-----SPTIHLGTYYTAEDAARAYDIISIKLKG 285
                         679***************77733.....6*******************98877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-9138201IPR016177DNA-binding domain
PROSITE profilePS5103212.339139200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-8139200IPR001471AP2/ERF domain
SMARTSM003801.0E-4139206IPR001471AP2/ERF domain
PROSITE profilePS5103214.131236293IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-11236294IPR016177DNA-binding domain
SMARTSM003803.2E-10236299IPR001471AP2/ERF domain
CDDcd000183.98E-12237295No hitNo description
PfamPF008473.6E-5237284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-11237293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MEESYSMLED ATTMEPTMLT TQGTSRNWNQ ESLLLHQHIV SPQMETTSQG SINNSTCTSS  60
LQYDVLSLLE GIINEKHIEE TLIQSKLFSY NVGSIAATAT ATSTIINERE RSDCEENDRR  120
QREACLDLVA KTIGSKSSVY RGVIKCNDDR FEAFVWDNSN PGERGRTVYI GAYSNEVDAA  180
KAHDLVSIRI GGLKALTNFH VRCYSKDMDE MRKMSKWDYL CAVRGLGKGY TDADSPFRGV  240
YRVPTSRKWE ARLGREGSPT IHLGTYYTAE DAARAYDIIS IKLKGGEAIT NFEWNSYETE  300
GIMESVITQA TDGSIILQKE GNNKQTEASS QNSSSVQCHP QPPSNPSFCR CCNSQILTPS  360
NPHALGAFAD TAGNSGSDNS TGNDAVQFRN ENATQQQPLQ TQRQVSFNEG FNQNLVNNNN  420
NQLPNHNATQ QQSLQTPSQV SFNYGFNQNL VNNNYNNSNQ FLPQSSNLAL PAPGIRNLEL  480
EKCVRFPDWR SGFGKKLLGG DMELEPLSSI ASLSVQPLPQ VTLNGSTGST QLYPPALHQS  540
YEHQNLNSFS SDSFQNPISE PNNNGFQSPI DLDIRDYLNR SYIEDTDFTC DYDMFSAMNG  600
VDKTSSAVNA SSFT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G137500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162259.10.0hypothetical protein PHAVU_001G137500g
TrEMBLV7CY050.0V7CY05_PHAVU; Uncharacterized protein
STRINGXP_007162259.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.18e-40AP2 family protein