PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G138200.1
Common NamePHAVU_001G138200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 368aa    MW: 40293.2 Da    PI: 6.1381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G138200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09211258455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  Phvul.001G138200.1 211 SHSLAERARREKINARMKLLQELVPGC----DKISGTAMVLDEIINHVQSLQ 258
                         8*************************9....78899***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-15205276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-9205262No hitNo description
PROSITE profilePS5088814.653207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-15208275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-7211258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-9213263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEQAPVGLRG SVHDGATLES IQFNEEIQGI MAPAPAPENA NSFTALLELP PTQAVELLHS  60
PDSDGTRNPL NCHVSANHKP YLLNSFGGNL TFPSNAALIE RAAKLSVFAG QNSSSPGEAR  120
LLPAGSGSNL DRVKNEPQET DSNPCSTQGC VSDPAVENKN ERTAKRKERE KKVTVKGSSK  180
KIKSVADETS GDGEKLPYVH VRVRRGQATD SHSLAERARR EKINARMKLL QELVPGCDKI  240
SGTAMVLDEI INHVQSLQRQ VEILSMKLAA VNPRIDFSLD SLLATDGASL MDSNIPSMMT  300
PLMWPEIPVN GNRQHYQQQW QFDAFHQPLW EREEVNHNFM TPENSLLSYD SSANSASLHS  360
NQLKMEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G138200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6172390.0FJ617239.1 Glycine max bHLH transcription factor PTF1 (PTF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162273.10.0hypothetical protein PHAVU_001G138200g
SwissprotQ8VZ021e-102BH048_ARATH; Transcription factor bHLH48
TrEMBLV7CVR70.0V7CVR7_PHAVU; Uncharacterized protein
STRINGXP_007162273.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-103bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]