PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G141900.3
Common NamePHAVU_001G141900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 225aa    MW: 23716.9 Da    PI: 9.1959
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G141900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-093055227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt++C+ f     Ck+Gd+C+FaHg+
  Phvul.001G141900.3 30 KTRICNKFNTAEGCKFGDKCHFAHGE 55
                        8***********************96 PP
2zf-CCCH361.2e-11192216126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC +f++ G C +G+rC+FaHg
  Phvul.001G141900.3 192 FKTKLCENFSK-GSCTFGERCHFAHG 216
                         69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.0E-142658IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-82759IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.612856IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-42855IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-63055IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.11E-1587168IPR004088K Homology domain, type 1
SMARTSM003222.2E-1296166IPR004087K Homology domain
PROSITE profilePS5008414.94897161IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.5E-1697165IPR004088K Homology domain, type 1
CDDcd001052.76E-1599162No hitNo description
PfamPF000135.3E-1299162IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.1E-15189222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8190221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23191218IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6191217IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9192216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNLTPAAPPA PRNVAALPPV PNGSAPSAVK TRICNKFNTA EGCKFGDKCH FAHGEWELGK  60
HIAPSFDDHR AMGPTASGRF AGRMEPSPGP ATSFGSHATA KISVEASLAG AIIGKGGVNS  120
KQICRQTGAK LSIREHESDP NIRNIELEGN FEQIKEASNM VKDLLLTLQM SASSKANQGV  180
PGAPIREHGS NFKTKLCENF SKGSCTFGER CHFAHGAAEL RKSV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G141900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162318.11e-165hypothetical protein PHAVU_001G141900g
RefseqXP_007162319.11e-165hypothetical protein PHAVU_001G141900g
SwissprotQ7F8R09e-76C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLV7CY571e-164V7CY57_PHAVU; Uncharacterized protein
STRINGXP_007162316.11e-163(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-65C3H family protein