PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G154700.1
Common NamePHAVU_001G154700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 367aa    MW: 42242.3 Da    PI: 5.5243
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G154700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99e-35491402102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+ +e++++++++sws+ g sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++
  Phvul.001G154700.1  49 FLTKTYDAVENPTTSHIVSWSRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFLRGHRH 130
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll +i+r+k+
  Phvul.001G154700.1 131 LLANIRRRKQ 140
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3445138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-5945138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.1E-3845138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-184972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-188799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-18100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MNYLYPVKEE YSESPPPSSP TSQTGADEST MVPLPRPMER LHEVGPPPFL TKTYDAVENP  60
TTSHIVSWSR GGASFVVWDP HAFSRDLLPR YFKHNNFSSF VRQLNTYGFR KIDPDKWEFA  120
NEGFLRGHRH LLANIRRRKQ PSQPSTQQGQ GHCVEVGHFG LDEEVDRLKR DKHVLMMELV  180
KLRQQQLNTR SHLEEMEERL RGTEIKQQQM MAFLARALKN PTFIQQLLQQ KEKRKELEEA  240
ISKKRRRPIE QGPRGVGESS IGREGISSVK VESQVFGEYG FGVSELEVLA LEMQGYGRGK  300
REQEEEPEAL ESQERLEKEL DEGFWEELFS EGFEGELHIP TSPDQDEEED VNVLANRFGY  360
LGSSPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-244713818120Heat shock factor protein 1
5hdg_A7e-24471388110Heat shock factor protein 1
5hdn_A7e-24471388110Heat shock factor protein 1
5hdn_B7e-24471388110Heat shock factor protein 1
5hdn_C7e-24471388110Heat shock factor protein 1
5hdn_D7e-24471388110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232246KRKELEEAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G154700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162466.10.0hypothetical protein PHAVU_001G154700g
SwissprotQ9LUH81e-124HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLV7CYV10.0V7CYV1_PHAVU; Uncharacterized protein
STRINGXP_007162466.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-99heat shock transcription factor A6B