PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G158700.1
Common NamePHAVU_001G158700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 211aa    MW: 23332.4 Da    PI: 7.9204
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G158700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000133254123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C+ C++ F++   L  H+++H
  Phvul.001G158700.1 32 YACSFCKREFKSAQALGGHMNVH 54
                        89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-62958No hitNo description
Gene3DG3DSA:3.30.160.607.2E-43057IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1363259IPR007087Zinc finger, C2H2
PfamPF139121.9E-63255IPR007087Zinc finger, C2H2
SMARTSM003550.00793254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEGNYLTRNT HKGDRFGFEE LSWGSSWPAR NYACSFCKRE FKSAQALGGH MNVHRRDRAR  60
LRSSLPSSSW VSECPKPNPS IVPNHTHLSP SPPSSCLSNN NLLNCAHCSP LYSPSLTLSF  120
SLNPPVSLNG DKKPRLASSQ FLPLSVSQEN EEIKICKNKE IGLEVEEEQG CAIGEECKGC  180
KSSEHNIKLE LGIGFIKQPE KLDLELRLGH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-112754229superman protein
2l1o_A5e-112754229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G158700.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162518.11e-152hypothetical protein PHAVU_001G158700g
TrEMBLV7CWF01e-151V7CWF0_PHAVU; Uncharacterized protein
STRINGXP_007162518.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.15e-16C2H2 family protein