PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G159600.2
Common NamePHAVU_001G159600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 734aa    MW: 81241.7 Da    PI: 6.3948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G159600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000175605971355
                         HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         R+ i +++ eLrel+P+ a      K s  + Le+A++++  Lq
  Phvul.001G159600.2 560 RQLIQDRIKELRELVPNgA------KCSIDSLLERAIKHMLFLQ 597
                         67799************77......777778*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.7E-355166IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00138540597No hitNo description
PROSITE profilePS5088810.925547596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-5560601IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-4560601IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MGTNLHQVLR SLCLNTHWNY AIFWKLKHRA RMILTWEDAY YNNPDDYDSS ENKHCRNIVE  60
QIGCGKFSHN ALGLAVAKMS YHAYSLGEGI VGQVAVTGKH RWICADNQVA GSGLSFEFAD  120
GWQSQFSAGI RTVAVVAVAP LGVVQLGSLN KVIEDTGFVT HIRNLFLSTQ NYSIAQCPSQ  180
MQGSLKSSLS QLDILKENLS SDVMPTGFYN SQKSMKSETS DVLMPLQCSG RNDAPHSACV  240
KMSDDVAKQE GPELYSDESS ILLQSISNMM NVEHQDFEEM KPLYGRKGEE GSSGCKDVRL  300
ESENNVLSFL SDFVTDNDLI CPSEKVKIDS AYFPSAFLDT VVCETDKLHY QKGVLNFTQP  360
SDANSQHVEK SKFCSEPSYK DMSHVLNFPV GCELHEALGP SFLKGSKCFD WPAQVNQDMK  420
TVEMSDEISQ LTSESRPEHL LEAMVANICH SNNDVNSELS FCPSMQSAMA SGKNHEASTH  480
NVYAINSEGC SIDQFSLVKE DKHHSLSSSS GICGVMSSKA VSSTFPSSSS GQLERSSEPS  540
KNSKKRARPG ESCRPRPRDR QLIQDRIKEL RELVPNGAKC SIDSLLERAI KHMLFLQSIT  600
KHADKLADFG DTKSKLHHME ADILGSSSYE QGSSWAMEVG GHLKVHSVLV ENLSKNGQML  660
VEMLCEECSH FLEIAEAIRS LGLTILKGGT KVHGEKIWIC FVVEGQNNRN VHRLDILWPL  720
VQILQSKSKV HSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G159600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162529.10.0hypothetical protein PHAVU_001G159600g
TrEMBLV7CYQ50.0V7CYQ5_PHAVU; Uncharacterized protein
STRINGXP_007162528.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-140conserved peptide upstream open reading frame 7