PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G160200.1
Common NamePHAVU_001G160200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 212aa    MW: 23643.7 Da    PI: 9.8051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G160200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.2e-1768114251
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          y+GVr+++ +g+ +AeIrdp+ ng   r+++g+f+taeeAa a+++a+ 
  Phvul.001G160200.1  68 PYRGVRRRP-WGKCAAEIRDPTRNG--VRVWIGTFDTAEEAALAYDQAAF 114
                         59*******.**********98887..*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.6868126IPR001471AP2/ERF domain
SMARTSM003807.1E-3368132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-2868126IPR001471AP2/ERF domain
PfamPF008473.7E-1169114IPR001471AP2/ERF domain
PRINTSPR003672.6E-106980IPR001471AP2/ERF domain
CDDcd000181.11E-2769125No hitNo description
SuperFamilySSF541715.56E-2269127IPR016177DNA-binding domain
PRINTSPR003672.6E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNFYSSFSYQ SLESHLNSWE ELFSFNNLPL NNATNASSLL DSNTSDTTYD GSNPQPLSVA  60
PTKKEKRPYR GVRRRPWGKC AAEIRDPTRN GVRVWIGTFD TAEEAALAYD QAAFLTRGVL  120
ATLNFSAQVV MESLKDMGFK ALRNSVSPLL ELKRMHVMRT KSRASRNGGK RVKRGCSKGK  180
FDSTTETVLV LEDLGPEYLE QLLTFTSPGS W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2569129666ATERF1
3gcc_A5e-2569129666ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G160200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162536.11e-156hypothetical protein PHAVU_001G160200g
TrEMBLV7CZ161e-155V7CZ16_PHAVU; Uncharacterized protein
STRINGXP_007162536.11e-156(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-35ethylene response factor 1