PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G170800.1
Common NamePHAVU_001G170800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 218aa    MW: 24489.4 Da    PI: 10.3162
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G170800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013106128123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C++ Fs+   L  H  +H
  Phvul.001G170800.1 106 FECKTCNRKFSSFQALGGHRASH 128
                         89**********99999998887 PP
2zf-C2H214.10.00014154176123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg+ Fs    L  H+r+H
  Phvul.001G170800.1 154 HECSICGQEFSLGQALGGHMRKH 176
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.19106128IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.13E-8106176No hitNo description
PROSITE profilePS5015710.699106133IPR007087Zinc finger, C2H2
PfamPF139129.0E-11106131IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-4152178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.067154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.533154181IPR007087Zinc finger, C2H2
PfamPF139122.3E-9154178IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MYPYINLRKG INLLKLKAQV SVGHKPHVDH IFWLLQRQHS GSNYVTRGVR VITTSQKRSP  60
TCMLGMKRQR GNEGFENLDL AKCLLLFSCP QESNKAQEKS FGSAEFECKT CNRKFSSFQA  120
LGGHRASHKK QKVEGEELKE QGKSLSLWSK PKMHECSICG QEFSLGQALG GHMRKHRGVS  180
NEGFVPIPSI DQVIAKIPVL KRSNSTRVMC LDLELHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G170800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162678.11e-161hypothetical protein PHAVU_001G170800g
TrEMBLV7CWX91e-160V7CWX9_PHAVU; Uncharacterized protein
STRINGXP_007162678.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-36C2H2 family protein