PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G173700.1
Common NamePHAVU_001G173700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 471aa    MW: 52199.1 Da    PI: 8.4549
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G173700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.2e-33196252360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Phvul.001G173700.1 196 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 252
                         9***************************************.***************85 PP
2WRKY102.82e-32392449259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k+ver+ +dp+ +++tYeg+Hnhe
  Phvul.001G173700.1 392 GDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERALDDPRSFVTTYEGKHNHE 449
                         5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-29182253IPR003657WRKY domain
SuperFamilySSF1182902.48E-25193253IPR003657WRKY domain
SMARTSM007749.4E-37194252IPR003657WRKY domain
PfamPF031062.5E-25196250IPR003657WRKY domain
PROSITE profilePS5081123.732196253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-33377451IPR003657WRKY domain
SuperFamilySSF1182902.62E-28384451IPR003657WRKY domain
PROSITE profilePS5081134.245386451IPR003657WRKY domain
SMARTSM007747.1E-38391450IPR003657WRKY domain
PfamPF031062.5E-25393449IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDIKEAERVV IAKPVASRPT CSTFKSFSEL LAGAINVSPD IVSSQATVSA IRPKTVRFKP  60
TALNHPPAGF DSSQADTFGA ALSNPSEKSL KLDTNQSLIY KPTAKLVSKT TVSLLANMKG  120
NCSTGQQQTR QLMEANFQHS INEKCRTSMS SHLDQSIALH SEINQISEPS KMVQQNTEED  180
QKTLTSSANC DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC THPNCPVKKK VERSFDGQIA  240
EIVYKGEHNH SKPQLPKRNT ASGTQGSGVV SDGMVQDMWS NSHSERNEGN DSRVDNTGGL  300
SALSDYYVKV PLPNDYVLNI GATNAGGGST ENSCGLSGEC EEASKGFEAH EEEPRSKRRK  360
NENHCNEVAL SEEGLVEPRI VMQSFTDSEI LGDGFRWRKY GQKVVKGNPY PRSYYRCTNI  420
KCNVRKHVER ALDDPRSFVT TYEGKHNHEM PLKNTERDSQ ASLSKDKPHN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-31196451877Probable WRKY transcription factor 4
2lex_A5e-31196451877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G173700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312420.0KT031242.1 Glycine max clone HN_CCL_24 WRKY transcription factor (Glyma19g36100.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162709.10.0hypothetical protein PHAVU_001G173700g
TrEMBLV7CZ990.0V7CZ99_PHAVU; Uncharacterized protein
STRINGXP_007162709.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-108WRKY family protein