PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G176100.1
Common NamePHAVU_001G176100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 306aa    MW: 35148.8 Da    PI: 8.7991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G176100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.8e-52151421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhP+deel+v+yL++kv++++l+  ++i+e+d+yk++Pw+L++k+  +e+ewyfF++rd+ky++g r+nra++sgyWkatg+dk+
  Phvul.001G176100.1  15 LPPGFRFHPSDEELIVHYLRNKVTSSPLPG-SFIAEIDLYKYNPWELRSKALFGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKP 104
                         79***************************9.89**************977777999*********************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ + +++g+kk Lvfy grapkg+ktdW+mheyrl
  Phvul.001G176100.1 105 IFTScGMKNIGVKKALVFYMGRAPKGSKTDWIMHEYRL 142
                         **9977888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-6212169IPR003441NAC domain
PROSITE profilePS5100560.12515169IPR003441NAC domain
PfamPF023651.1E-2716142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MFIFMDKDAN LEIQLPPGFR FHPSDEELIV HYLRNKVTSS PLPGSFIAEI DLYKYNPWEL  60
RSKALFGEDE WYFFTPRDRK YPNGVRPNRA AASGYWKATG TDKPIFTSCG MKNIGVKKAL  120
VFYMGRAPKG SKTDWIMHEY RLQNSMISIP QQRGSMRLDE WVLCRVRQKT GSTRSTWEDS  180
NESIHEPTRH FPEMNKNSNP EPAKNCIGIA SGSGFGCNND VKAYASWYDD NSNIVIGAQF  240
MAPVTEGLFN PLKRKNIEEN DRLDLLNKKI SEEVDVGKQR VEKDVNKGYN FNNFDHWTSI  300
IQPRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-6711691168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G176100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-128AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162738.10.0hypothetical protein PHAVU_001G176100g
SwissprotQ8GY424e-79NAC25_ARATH; NAC transcription factor 25
TrEMBLV7CX280.0V7CX28_PHAVU; Uncharacterized protein
STRINGXP_007162738.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-81NAC domain containing protein 25