PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G181200.1
Common NamePHAVU_001G181200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 354aa    MW: 39234.3 Da    PI: 8.2897
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G181200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023258280123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  Fs+   L  H+r+H
  Phvul.001G181200.1 258 HECSICGSEFSSGQALGGHMRRH 280
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-10173197IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-8173196No hitNo description
SMARTSM003550.14174196IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265174196IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-8253280No hitNo description
PfamPF139122.0E-11257281IPR007087Zinc finger, C2H2
SMARTSM003550.02258280IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764258280IPR007087Zinc finger, C2H2
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGLLQSQPNL TRFLPSSCLT LHLFFSLSLH FTSTSKFGNA TTLANPKHVT ITIRGTFFPQ  60
PFPLSSLLFF HSSLILHNII SLITMQMQEE HMQIIKGKRT KRQRLPSPLR LTMPTCSTAG  120
RSSTDNFADF DPVTTSNELR NQEDEDLANC LILLAQGHNT PKPSHNKESG LYVYECKTCN  180
RCFPSFQALG GHRASHKRFS KASAEEKQGP LTTFGDNNNH DDYCVPTSTT LTLQLSTFLY  240
NSSNSTRSST INAKPKVHEC SICGSEFSSG QALGGHMRRH RNFVSAPTSG TIAYGGDGSP  300
EIPETKKHKD VLNLDLNLPA PEDDHHRESN LFPFQSKEKV IVFSATSLVD CHY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G181200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-144AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162794.10.0hypothetical protein PHAVU_001G181200g
SwissprotQ681X42e-53ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLV7CZG80.0V7CZG8_PHAVU; Uncharacterized protein
STRINGXP_007162794.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-53C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]