PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G192000.1

Common Name

PHAVU_001G192000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

NAC

Protein Properties

Length: 253aa MW: 29197.6 Da PI: 6.5227

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G192000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.1	7.6e-45	4	135	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +ppG+rF Pt+eel+++yL++k+eg++ ++++vi+ vdiy+++P +Lp+ +++ + ++w+fF++r++++a+g r++r t++gyWkat Phvul.001G192000.1 4 MPPGYRFYPTEEELISFYLHNKLEGERDDMNRVIPVVDIYDYNPTQLPQisgeaSLRDTAEQWFFFIPRQESEARGGRPRRLTTTGYWKAT 94 79**************************99***********96566554444667************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g+ ++v+s++++ +g+k+t+vfy+grap+g ktdW m+ey+ Phvul.001G192000.1 95 GSPNHVYSSDNRIIGIKRTMVFYSGRAPNGAKTDWKMNEYT 135 **************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.2E-47	4	154	IPR003441	NAC domain
PROSITE profile	PS51005	48.35	4	154	IPR003441	NAC domain
Pfam	PF02365	1.7E-22	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEIMPPGYRF YPTEEELISF YLHNKLEGER DDMNRVIPVV DIYDYNPTQL PQISGEASLR 60 DTAEQWFFFI PRQESEARGG RPRRLTTTGY WKATGSPNHV YSSDNRIIGI KRTMVFYSGR 120 APNGAKTDWK MNEYTAIKDS QLRKEFSLCR VYKKSKCLRA FDRRPPARRN KVRYFTGQSG 180 EEQEKGSIST SFDDHKHQML ERSATCSPES SSSGDLDHDQ PLLHGQGETQ MDVDKDPFLD 240 WEKVDLFLGS EL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-33	4	154	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-33	4	154	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-33	4	154	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-33	4	154	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-33	4	154	20	168	NAC domain-containing protein 19
3swm_B	2e-33	4	154	20	168	NAC domain-containing protein 19
3swm_C	2e-33	4	154	20	168	NAC domain-containing protein 19
3swm_D	2e-33	4	154	20	168	NAC domain-containing protein 19
3swp_A	2e-33	4	154	20	168	NAC domain-containing protein 19
3swp_B	2e-33	4	154	20	168	NAC domain-containing protein 19
3swp_C	2e-33	4	154	20	168	NAC domain-containing protein 19
3swp_D	2e-33	4	154	20	168	NAC domain-containing protein 19
4dul_A	1e-33	4	154	17	165	NAC domain-containing protein 19
4dul_B	1e-33	4	154	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G192000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-122	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007162925.1	0.0	hypothetical protein PHAVU_001G192000g
Swissprot	Q9FMR3	3e-71	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	V7CXR1	0.0	V7CXR1_PHAVU; Uncharacterized protein
STRING	XP_007162925.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-65	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Phvul.001G192000.1
Entrez Gene	18641896

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]