PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G193100.1
Common NamePHAVU_001G193100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 298aa    MW: 33180.4 Da    PI: 7.5773
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G193100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.93.2e-3170174194
                         EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                         f+k ltpsdv+k++rlv+pk++ae+h            g++++++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L +gD+v
  Phvul.001G193100.1  70 FEKPLTPSDVGKLNRLVIPKQHAEKHfplesssssssCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVV 160
                         99***************************999999994455799*********************************************** PP

                         EEEE-SSSEE..EE CS
                  B3  81 vFkldgrsefelvv 94 
                          F++++++ +++++
  Phvul.001G193100.1 161 FFHRHRTHPQRFFI 174
                         ***87765555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-4062182IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-3166176IPR015300DNA-binding pseudobarrel domain
CDDcd100173.10E-2969167No hitNo description
PROSITE profilePS5086313.53570180IPR003340B3 DNA binding domain
SMARTSM010191.4E-2270178IPR003340B3 DNA binding domain
PfamPF023626.9E-2870174IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSINHYSPEA RLYWSEQQQA ATWLGNSHTP RFNLNDNQEE VEEEEEEVVV AAAAENGGGG  60
AAGEEKETMF EKPLTPSDVG KLNRLVIPKQ HAEKHFPLES SSSSSSCGDS AKGVLLSFED  120
ESGKCWRFRY SYWNSSQSYV LTKGWSRYVK DKRLHAGDVV FFHRHRTHPQ RFFITSTRRQ  180
ANPPAHVNST ATASFYSAQP YPAHHLPFPY QPLSLHAAPG GGSQGQNQTT PGGNSSGGRV  240
LRLFGVNMEC QPHNDSQNST PQCSYTLSST LSHHHLHRQT SYSSSPNPHH HMLRQLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-466717411112DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G193100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162942.10.0hypothetical protein PHAVU_001G193100g
SwissprotQ8RYD32e-60Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLV7D1760.0V7D176_PHAVU; Uncharacterized protein
STRINGXP_007162942.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.14e-61B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]