PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G196100.1

Common Name

PHAVU_001G196100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 262aa MW: 29417.6 Da PI: 6.6591

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G196100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.4	8.5e-35	15	68	7	60
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC +ntkfCyynnys +qPryfCk+CrryWtkGG+lrnvP+Ggg+rk+++ Phvul.001G196100.1 15 NCPRCSCSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRR 68 8**************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-24	1	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-29	14	68	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.764	14	68	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	16	52	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MERGWKANSV EISPNCPRCS CSNTKFCYYN NYSSTQPRYF CKGCRRYWTK GGSLRNVPIG 60 GGCRKSRRGR YNKTLRQANS PVGHSDLRPS SSVMSDGPNI DIAQVYASFL NVKPDQVQTF 120 CSPSPEYSSI INTDFGHSAL SEEHGLTGRL HFHEQPTESY FSEDIGMYFC GLNSIQKHKE 180 YSSSHDTTVT KTNFELPPLP GEDAETSHGN VLWSNSEMMV DHGLQATQWP LFEPEAYDAD 240 FLMGNCWSHF DLPRDASFST P*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G196100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007162976.1	0.0	hypothetical protein PHAVU_001G196100g
TrEMBL	V7D0D2	0.0	V7D0D2_PHAVU; Uncharacterized protein
STRING	XP_007162976.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-49	Dof family protein

Link Out ? help Back to Top
Phytozome	Phvul.001G196100.1
Entrez Gene	18641940