PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G204700.1

Common Name

PHAVU_001G204700g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 524aa MW: 57051.8 Da PI: 8.0396

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G204700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Phvul.001G204700.1 84 FVCEICNKGFQRDQNLQLHRRGH 106 89*******************88 PP
2	zf-C2H2	16.2	3e-05	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ Phvul.001G204700.1 160 WKCDKCSKRYAVQSDWKAHQKTC 182 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	83	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.36E-8	83	106	No hit	No description
PROSITE profile	PS50157	10.949	84	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	84	106	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.4E-5	84	106	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	75	125	155	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.7E-6	148	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.36E-8	155	181	No hit	No description
SMART	SM00355	89	160	180	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MSNISGDEGS FSSGNNGEEV HQESQHQQPQ IQLHDTSPGP SAACNSNAST NQQAKKKRNL 60 PGTPDPSAEV VALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTSTEV 120 KKRVYVCPEP SCVHHNPARA LGDLTGIKKH YSRKHGEKKW KCDKCSKRYA VQSDWKAHQK 180 TCGTREYKCD CGTIFSRRDS FITHRAFCDA LTEENNRVNQ GLTSGMPPNL QSQIPDLMST 240 MPLNTSPNTA YDPKNPLKSL PQELVPIPFK SMSMGGGMFS TNAGALFGGP KTMPPSSSNL 300 QLGSNTSSSF NYLQDNKSAG LIAASAQMSA TALLQKAAQM GATASNSINS PMMQKGFVTG 360 TTAPDHVSST RPPYSGAMLQ HNNSYEHFCP QPDLSNMAGV SGGGAFINQL FHKGQEISQV 420 FDTNTAGSNI NDVGMFSQMP LGSDHNPGLM KNVEQEVSNC SSLIHGRDVV EGNPMQPSRF 480 GGSDMTTVHD FLGIGGSTSR VMNHFHHHFP HEDSAMEEHM WDV*

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MSNISGDEGS FSSGNNGEEV HQESQHQQPQ IQLHDTSPGP SAACNSNAST NQQAKKKRNL  60
PGTPDPSAEV VALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTSTEV  120
KKRVYVCPEP SCVHHNPARA LGDLTGIKKH YSRKHGEKKW KCDKCSKRYA VQSDWKAHQK  180
TCGTREYKCD CGTIFSRRDS FITHRAFCDA LTEENNRVNQ GLTSGMPPNL QSQIPDLMST  240
MPLNTSPNTA YDPKNPLKSL PQELVPIPFK SMSMGGGMFS TNAGALFGGP KTMPPSSSNL  300
QLGSNTSSSF NYLQDNKSAG LIAASAQMSA TALLQKAAQM GATASNSINS PMMQKGFVTG  360
TTAPDHVSST RPPYSGAMLQ HNNSYEHFCP QPDLSNMAGV SGGGAFINQL FHKGQEISQV  420
FDTNTAGSNI NDVGMFSQMP LGSDHNPGLM KNVEQEVSNC SSLIHGRDVV EGNPMQPSRF  480
GGSDMTTVHD FLGIGGSTSR VMNHFHHHFP HEDSAMEEHM WDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	156	219	3	66	Zinc finger protein JACKDAW
5b3h_F	1e-34	156	219	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G204700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ840770	0.0	HQ840770.1 Phaseolus vulgaris clone BAC B1-157 genotype G19833, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007163083.1	0.0	hypothetical protein PHAVU_001G204700g
Swissprot	Q9SCQ6	1e-113	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	V7CY06	0.0	V7CY06_PHAVU; Uncharacterized protein
STRING	XP_007163083.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-115	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Phvul.001G204700.1
Entrez Gene	18642027

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]