PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G211400.1

Common Name

PHAVU_001G211400g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 181aa MW: 20134.9 Da PI: 10.4177

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G211400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+++F ++ L H++ H Phvul.001G211400.1 38 FRCHYCKRVFANSQALGGHQNAH 60 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.8E-4	35	64	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.12E-6	35	65	No hit	No description
PROSITE profile	PS50157	11.51	38	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MSDNHKTKSS APKLFGFPLT ELEEFAERKY DVGEDRKFRC HYCKRVFANS QALGGHQNAH 60 KKERQRARRF QIHHHRRSSV PPSSASVPPL TFLTSHAIIR SVPLSVTLPP ICLPSPSTST 120 TAKHFSSRPI FLSSSTHPTT TISTTSCFPF QLYASPAVLQ SASTVFDFSA DREVDVHLKL 180 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G211400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM061356	0.0	KM061356.1 Phaseolus vulgaris cultivar Sprite Bng227 marker genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007163160.1	1e-129	hypothetical protein PHAVU_001G211400g
TrEMBL	V7CYJ0	1e-127	V7CYJ0_PHAVU; Uncharacterized protein
STRING	XP_007163160.1	1e-128	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3903	24	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	1e-15	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Phvul.001G211400.1
Entrez Gene	18642095