PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G211700.1
Common NamePHAVU_001G211700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 300aa    MW: 34538.8 Da    PI: 5.738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G211700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +grWT eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Phvul.001G211700.1 14 KGRWTMEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding52.98.6e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg  ++eE+  +v++++ lG++ W++Ia++++ gRt++++k++w+++l
  Phvul.001G211700.1  67 RGDISAEEENTIVKLHTSLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                         67789*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.139961IPR017930Myb domain
SuperFamilySSF466891.53E-2711108IPR009057Homeodomain-like
SMARTSM007172.2E-101363IPR001005SANT/Myb domain
PfamPF002491.5E-131461IPR001005SANT/Myb domain
CDDcd001671.21E-61661No hitNo description
PROSITE profilePS5129424.90562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2465116IPR009057Homeodomain-like
SMARTSM007172.6E-1566114IPR001005SANT/Myb domain
PfamPF002493.0E-1467112IPR001005SANT/Myb domain
CDDcd001672.63E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTME EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGDI SAEEENTIVK LHTSLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIYTFR  120
GSSNAKTDII TLTLPPKRKR GRTSRWAMKK NKTSCVLKQN QPLLPAVPLP PTPPLETEKH  180
SSTNGNTATQ EEENGGNNGI WLEGEENIII DEDDIWTPYD KEVINEEEML QYFCSDKTSD  240
YDLCQSKVPL DHKDESVSWE QYQSLLTWLC QDEDWEKDFQ SVGEIDHQKQ KDMVDWFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G211700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163163.10.0hypothetical protein PHAVU_001G211700g
TrEMBLV7CYC80.0V7CYC8_PHAVU; Uncharacterized protein
STRINGXP_007163163.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.16e-76myb domain protein 111