PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G213600.1
Common NamePHAVU_001G213600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 262aa    MW: 29746.8 Da    PI: 4.5395
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G213600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.62.9e-2956114259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YY+C+++ gC++kk+ver+++d ++++itY++ Hnh+
  Phvul.001G213600.1  56 SDFWSWRKYGQKPIKGSPYPRGYYKCSTSkGCSAKKQVERCRTDASTLIITYTSAHNHP 114
                         699***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-3148116IPR003657WRKY domain
PROSITE profilePS5081131.7250116IPR003657WRKY domain
SuperFamilySSF1182902.09E-2553116IPR003657WRKY domain
SMARTSM007742.2E-3455115IPR003657WRKY domain
PfamPF031062.7E-2457114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDTDANASPQ PESEPSSELK SSETQTSKKR KMVEKTVVAV RIGENVGKLK NEGLPSDFWS  60
WRKYGQKPIK GSPYPRGYYK CSTSKGCSAK KQVERCRTDA STLIITYTSA HNHPCPTTTT  120
TTNSPQQPKE SESETTQDLS ATSKEEDPEH IEEEQRDNNN NKPSDEEKFL YLQSPIRCSQ  180
DIEMEQEDPF KLNTEKSHER IDLLLEEEEE PLCYAQVKNL SASKNEELDF FDELEELPMS  240
SSFLPFTRSI FSDERIPVAP F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-21561171780Disease resistance protein RRS1
5w3x_D7e-21561171780Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G213600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195560.0EU019556.1 Glycine max WRKY8 (WRKY8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163184.10.0hypothetical protein PHAVU_001G213600g
TrEMBLV7D0M10.0V7D0M1_PHAVU; Uncharacterized protein
STRINGXP_007163184.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.22e-34WRKY DNA-binding protein 69