PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G218500.1
Common NamePHAVU_001G218500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 520aa    MW: 56013.6 Da    PI: 7.9652
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G218500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-30284342259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+ ed++v+++tYeg+Hnh+
  Phvul.001G218500.1 284 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCVEDKTVLTTTYEGNHNHP 342
                         7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-32268344IPR003657WRKY domain
SuperFamilySSF1182903.14E-27276344IPR003657WRKY domain
PROSITE profilePS5081129.264278344IPR003657WRKY domain
SMARTSM007749.1E-36283343IPR003657WRKY domain
PfamPF031067.0E-26285342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MENRHHRELT FLSSGGDFLN PPLDHTTHNT DSTIKEMDFF SSPSSPPTNK NNSTNHINHD  60
HQKHVRNQDR THRQGSPTHV SHHPVNTGLN LTCVSAGVTK EENGENPEAE MSSLESQLRR  120
LQEDNRKLRT VLDQITRSYT QLQAQLFITL QKQKLHQNST EANGIVSGKK NVDPAGACSK  180
LEVVNDASVC DEKTDGEVSV CRSNNVEVMS KTHDEAPQLI KLNLGKQACR DAAEDVLDRS  240
SSQSWGSNKL EEQPKTAEQV AADQIPLRKA RVSVRARSEA PLISDGCQWR KYGQKMAKGN  300
PCPRAYYRCT MAVGCPVRKQ VQRCVEDKTV LTTTYEGNHN HPLPPAATAM ASTTSAAAAM  360
LLSGSTPSKE ALTNSAGYYS SLPYASMATL SASAPFPTIT LDLTQNPNAM HLHRVPPHAT  420
TFPLPLHASG GPHLLGHPLF FSQKLPPAAS PLLHPRQPSS MVETVSAAIA SDPNFTAALA  480
AAISSIIGVP RGSDGGNNGT SGAIGSPQLP QSCTTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21273344777Probable WRKY transcription factor 4
2lex_A2e-21273344777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G218500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163249.10.0hypothetical protein PHAVU_001G218500g
TrEMBLV7D0T00.0V7D0T0_PHAVU; Uncharacterized protein
STRINGXP_007163249.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-74WRKY family protein