PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G218800.1
Common NamePHAVU_001G218800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 550aa    MW: 61255.9 Da    PI: 8.2394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G218800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14347392454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          hn  E++RR++iN+++ +L+el+P++      K++Ka++L  A++Y+k L
  Phvul.001G218800.1 347 VHNLSEKKRREKINKKMRTLKELIPNC-----NKVDKASMLDDAIDYLKTL 392
                         5*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-19341407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.346343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-12347392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17348401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.54E-15348397No hitNo description
SMARTSM003536.4E-16349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MIQEMLHSTR SAMTRTSSHV PSIYDNDLLE LVWENGEVVV RGGSSDRSRK SNEERVYEDV  60
SIKRTRLNPL YSLEDHLPPL KESYMSSSYQ SNAQDSCHSA QTKNSCKLNE EFENLLRQAK  120
DSKPVTPSYT LLQQCSPSSP LKKQRTDSTQ TLPPPNARNL GFDQRTAKVN FSNFSIPAVF  180
LKSSTCQGSR TTQQAKNHSS PPRTEEIEAP KVEKSTKESQ GFQKQTSLTV ERSAKPPPPL  240
DEHSEAIGHG IHRYQDQLRC DQTSGSESLR AKENAYNNNN NNTFCQEPFL ASSVCSLGAS  300
NDPNHGIRKH EDTDDSIYLS DNDEEPENMV TQDREGNRVK RSRNAVVHNL SEKKRREKIN  360
KKMRTLKELI PNCNKVDKAS MLDDAIDYLK TLKLQLQIMS MGSGLWPLMM LPAAAAPHMN  420
GPHLPQLVGA GMGFRPPQLP IPPLSAITDN RLHHMFGFPN QIPTMPMPHA PFFPIIGNSP  480
TEPPLAATTT PTIPNMAQHL AKTAASLQVS LPTNLDPQEH ASNRLQNPVS FHPHGISTPL  540
ATPFIFPQR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352357KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G218800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163252.10.0hypothetical protein PHAVU_001G218800g
TrEMBLV7D2250.0V7D225_PHAVU; Uncharacterized protein
STRINGXP_007163252.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-27phytochrome interacting factor 3