PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G226500.1
Common NamePHAVU_001G226500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 107aa    MW: 11956 Da    PI: 9.8254
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G226500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.8e-191953135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+ttkTplWR gp g+ktLCnaCG++yrk+g+
  Phvul.001G226500.1 19 CADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRGS 53
                        ********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.8881352IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-141364IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-151453IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.14E-131653No hitNo description
PfamPF003203.7E-171953IPR000679Zinc finger, GATA-type
CDDcd002025.81E-131954No hitNo description
PROSITE patternPS0034401944IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MMDLKEWSSS ELNQNKKCCA DCKTTKTPLW RGGPAGPKTL CNACGIRYRK RGSCSRKREE  60
VVVLHRTSSV VKKQSWKMLG EEEQAAVCLM ALSCGFLPFL HLPHSR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G226500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-84AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163338.16e-74hypothetical protein PHAVU_001G226500g
SwissprotQ9FJ101e-25GAT16_ARATH; GATA transcription factor 16
TrEMBLV7CYU01e-72V7CYU0_PHAVU; Uncharacterized protein
STRINGXP_007163338.12e-73(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-18GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]