PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G233900.1
Common NamePHAVU_001G233900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 83aa    MW: 9593.75 Da    PI: 5.976
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G233900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-071154344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT    +++ +a  ++  +   +W+ Ia+ +g  ++ +++k ++
  Phvul.001G233900.1 11 SWTRLQNKQFEKALVLYDEDtpdRWHHIAKDVG-DKSVEEVKRHY 54
                        799999************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.23762IPR017884SANT domain
SMARTSM007171.3E-5860IPR001005SANT/Myb domain
SuperFamilySSF466891.62E-111066IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-61064IPR009057Homeodomain-like
CDDcd001675.16E-61154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MASNSLDMNP SWTRLQNKQF EKALVLYDED TPDRWHHIAK DVGDKSVEEV KRHYAILLED  60
VSRIESGHIP IPQYKFSENM HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-23177176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G233900.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150378e-87AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163428.13e-56hypothetical protein PHAVU_001G233900g
SwissprotQ1A1737e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLV7CZ206e-55V7CZ20_PHAVU; Uncharacterized protein
STRINGXP_007163428.11e-55(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-32RAD-like 6