PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G243400.1
Common NamePHAVU_001G243400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-X1
Protein Properties Length: 883aa    MW: 98316.1 Da    PI: 8.332
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G243400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.31.4e-07255273119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG H+C + CH+G CppC+
  Phvul.001G243400.1 255 CGVHRCAEVCHRGACPPCR 273
                         ******************7 PP
2zf-NF-X1186.1e-06415434120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG+H C++ C+ G+CppC++
  Phvul.001G243400.1 415 CGRHACKRRCCDGDCPPCSE 434
                         ******************85 PP
3zf-NF-X118.35e-06436460119
            zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                         CG      +HkC ++CH+GpC pCp
  Phvul.001G243400.1 436 CGrrlrckNHKCPSPCHRGPCAPCP 460
                         777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.17E-590163No hitNo description
PROSITE patternPS01359091157IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.03E-5191239No hitNo description
SMARTSM004380.072203221IPR000967Zinc finger, NF-X1-type
PfamPF014220.071203220IPR000967Zinc finger, NF-X1-type
CDDcd060087.56E-9245293No hitNo description
SMARTSM004388.7E-5255274IPR000967Zinc finger, NF-X1-type
PfamPF014229.4E-6255273IPR000967Zinc finger, NF-X1-type
CDDcd060089.41E-9298345No hitNo description
SMARTSM004380.0012308327IPR000967Zinc finger, NF-X1-type
PfamPF014220.054308326IPR000967Zinc finger, NF-X1-type
CDDcd060084.11E-9352401No hitNo description
SMARTSM004380.16362382IPR000967Zinc finger, NF-X1-type
PfamPF014220.0031362381IPR000967Zinc finger, NF-X1-type
CDDcd060083.21E-8405453No hitNo description
SMARTSM004380.0092415434IPR000967Zinc finger, NF-X1-type
PfamPF014228.5E-4415433IPR000967Zinc finger, NF-X1-type
CDDcd060088.17E-11432479No hitNo description
PfamPF014220.0028436460IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0079442461IPR000967Zinc finger, NF-X1-type
SMARTSM00438170505520IPR000967Zinc finger, NF-X1-type
PfamPF01422100509519IPR000967Zinc finger, NF-X1-type
SMARTSM0043855528573IPR000967Zinc finger, NF-X1-type
PfamPF0142233528537IPR000967Zinc finger, NF-X1-type
SMARTSM004387.6610641IPR000967Zinc finger, NF-X1-type
PfamPF014220.15610620IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0094647665IPR000967Zinc finger, NF-X1-type
PfamPF014220.16649664IPR000967Zinc finger, NF-X1-type
SMARTSM0043872710732IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MRQSPHQISD IAANMTSAWT RPHSHPSPSP PTLLSDSDSD ADGSSASEIH RHSDLSDSIF  60
KPYLEFSGHS GADLSKIQSF LTSSSAGALS CLICLERIKP SDPTWSCSSL CYAVFHLICI  120
QSWARQASDL AAARAATRLP ISPATASDTA LWNCPKCRSE YPKSHIPKTY LCFCGKVDNP  180
PNDPWVLPHS CGEVCGRPLK HNCGHHCLLL CHPGPCPSCP KLVKVRCFCG CIEDVRRCGF  240
KEFSCNNPCS KVLDCGVHRC AEVCHRGACP PCRTRGVYAC QCGRVKEEKE CCDRVFQCDH  300
PCEKRLGCGK HVCERGCHPG ECGECPLKGK RTCPCGKRVY EGIPCDASVQ LCGATCDKML  360
PCGYHRCPER CHRGQCVETC RVVVKKSCRC GSLKKDVPCY QDLACERKCQ RMRDCGRHAC  420
KRRCCDGDCP PCSEICGRRL RCKNHKCPSP CHRGPCAPCP IMVTISCACG ETRFEVPCGI  480
EMDQKPPRCP KPCPITPLCR HASNCKPHKC HYGACHPCRL PCAKEYQCGH TCKLRCHGAK  540
PPPNQEFTLK PKKKKIIQQS EGVPGTPCPP CPELEWRSCV GKHIGADRMM VCSDKSQFSC  600
ENLCGNPLPC GNHYCTKTCH ALENQLRESE PCEDCYLPCQ QEREPACPHS CPRRCHPGDC  660
PPCKVLIKRS CHCGAMVHVF ECLYYNSLSA KGQETVRSCG GPCHRKLPNC THLCPETCHP  720
GQCTNAEKCC KKVTVRCKCQ TLKKEWVCQD VQAAYHHMGC HPKDTPKNQF GIGLIPCNSD  780
CKSKVQVVES ELQLRKSRVT EVQEQDTEKS ARKRRKRRER VLESKETSKL QKIISGAKRL  840
LLFVFILIIL VAATYYGYKG LLWLSDWMNE VDERRQRYSG IK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1811817RKRRKRR
2811818RKRRKRRE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G243400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163547.10.0hypothetical protein PHAVU_001G243400g
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLV7D2T70.0V7D2T7_PHAVU; Uncharacterized protein
STRINGXP_007163547.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors