PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G244500.2

Common Name

PHAVU_001G244500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 273aa MW: 30263.8 Da PI: 9.1883

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G244500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.1	7.6e-14	86	132	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++++k+L Phvul.001G244500.2 86 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDHVKDL 132 79***********************8.....7**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.504	83	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-13	86	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.79E-10	86	135	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-15	86	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-11	86	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.8E-12	89	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00314	179	214	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MGDKRLRNHG RNFRMVSIVS MENYYDSGWH MGTSWAQCSD HSSSFAVPTQ ILPHVTDSAS 60 LQFGEFHSWP LPIEGAAEER AMSASKSHSQ AEKRRRDRIN AQLATLRKLI PKSDKMDKAA 120 LLGSVIDHVK DLKRKAMDVS RAFTVPTEID EVSIDCDHVQ DESCTKVNKL KENIVIKASV 180 CCDDRPELFP ELIQVLKGLR LTAVKADIAS VGGRIKSILV LCSKDGEEGV CLTTLKQSLK 240 SAVTKIASSS MTSNCPTRSK RQRFFLPSRC LQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G244500.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT089476	0.0	BT089476.1 Soybean clone JCVI-FLGm-2E23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007163561.1	0.0	hypothetical protein PHAVU_001G244500g
Refseq	XP_007163562.1	0.0	hypothetical protein PHAVU_001G244500g
TrEMBL	V7D1Z3	0.0	V7D1Z3_PHAVU; Uncharacterized protein
STRING	XP_007163561.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	6e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Phvul.001G244500.2
Entrez Gene	18642434