PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G245800.1

Common Name

PHAVU_001G245800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

LBD

Protein Properties

Length: 182aa MW: 20322.3 Da PI: 6.6496

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G245800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.7	4.9e-44	22	121	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ Phvul.001G245800.1 22 PCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIQQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQ 112 7**************************************************************************************** PP DUF260 92 aelallkee 100 +la++++e Phvul.001G245800.1 113 MQLAVAQAE 121 **99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.757	21	122	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-43	22	119	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MLLSFYSQTK QGICNQMAGN SPCASCKLLR RRCTKDCIFA PYFPSNDPQK FALVHKVFGA 60 SNVSKMLQEL PIQQRADAVS SLVYEAHARV RDPVYGCVGA ISYLQNQVSE LQMQLAVAQA 120 EILCIQMQQE PVMPNPEMEN PDHKSYLLHN ELPQFLNYAS SSNVIYDAVT RESIYGHDLV 180 S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-47	18	123	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-47	18	123	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G245800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-170	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007163576.1	1e-133	hypothetical protein PHAVU_001G245800g
Swissprot	Q8LBW3	2e-71	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	V7D211	1e-132	V7D211_PHAVU; Uncharacterized protein
STRING	XP_007163576.1	1e-133	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-68	LBD family protein

Link Out ? help Back to Top
Phytozome	Phvul.001G245800.1
Entrez Gene	18642448

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]