PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G252500.1
Common NamePHAVU_001G252500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 356aa    MW: 39887.9 Da    PI: 6.7164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G252500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.7e-07153174223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++Cgk F+r  nL+ H+r H
  Phvul.001G252500.1 153 FCEICGKGFRRDANLRMHMRAH 174
                         6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-6148175No hitNo description
SMARTSM003550.0017152174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.905152179IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-6154176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SMARTSM0035529199232IPR015880Zinc finger, C2H2-like
SMARTSM0035580237259IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSNSNHPNAD PTLKFKSQDP NTTANPQLPL QNLSQVRTRI DSLQHFLSQS INTNTPLTTD  60
QINMVSTHII SSIHQIIVNG AALVTYSQHS YAAVTPDASP YPKPEPSAAY KHKQLLDSKL  120
EPPEDDDGAE DDVVDCEIVE LDAVEILEEH IHFCEICGKG FRRDANLRMH MRAHGDQFKT  180
PEALAKPSET GAARRAMRFS CPFEGCNRNK LHRRFRPLKS VVCLKNHFKR SHCPKMYSCT  240
RCHRKHFSVL SDLKSHAKHC GECRWKCTCG TTFSRKDKLF GHIALFEGHA PALACDEEDK  300
GKQVVSDDEN PRLTSESGFG LVNCFGDEEL PEGFFDDFGS IDDYCLREVL GFPSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G252500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163652.10.0hypothetical protein PHAVU_001G252500g
TrEMBLV7D3590.0V7D359_PHAVU; Uncharacterized protein
STRINGXP_007163652.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-74C2H2 family protein