PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G254000.1

Common Name

PHAVU_001G254000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HD-ZIP

Protein Properties

Length: 297aa MW: 34140 Da PI: 4.5318

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G254000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	4.9e-19	63	116	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Phvul.001G254000.1 63 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 116 566899***********************************************9 PP
2	HD-ZIP_I/II	130.8	5.1e-42	62	154	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++dalk + ++L++++e+Lr+++ Phvul.001G254000.1 62 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQI 152 69****************************************************************************************9 PP HD-ZIP_I/II 92 ke 93 ke Phvul.001G254000.1 153 KE 154 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.07E-19	48	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.799	58	118	IPR001356	Homeobox domain
SMART	SM00389	6.3E-18	61	122	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-16	63	116	IPR001356	Homeobox domain
CDD	cd00086	1.27E-15	63	119	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.7E-20	65	125	IPR009057	Homeodomain-like
PRINTS	PR00031	8.0E-6	89	98	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.0E-6	98	114	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.8E-16	118	159	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MKRLSSNSSD SSSTPLITIC PTPEEQSTRN CQQHVYGREF QSMMLEGLDE EGCVEEVGHQ 60 SEKKRRLSVD QVKALEKNFE VENKLEPERK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL 120 ERDYGVLKAN FDALKLNYDT LNHDNEALRK QIKELKLRLE EGVSVKEEIM MPDSEDKTTM 180 EQSKSEPSWE SEEQLNYECF NNNDCFGGAS LFPVDFKDGS SDSDSSAILN EENNKCSPIT 240 EDLLLSPKSS SMNCLQFQKA YQTQYVVKME EHNFLSADEA CNFFSDEQAP TLQWWS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G254000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-167	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007163670.1	0.0	hypothetical protein PHAVU_001G254000g
Swissprot	P46668	4e-68	ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBL	V7CZY4	0.0	V7CZY4_PHAVU; Uncharacterized protein
STRING	XP_007163670.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1868	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	1e-67	homeobox protein 6

Link Out ? help Back to Top
Phytozome	Phvul.001G254000.1
Entrez Gene	18642530

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]