PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G258700.1
Common NamePHAVU_001G258700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 378aa    MW: 43075.5 Da    PI: 6.0866
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G258700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.38.9e-2866148286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W ++e++ Li +rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++    s +++y+++++
  Phvul.001G258700.1  66 WVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGG--SGSAKMSYYKEID 148
                         ********************************************************************98..34558*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-457127IPR009057Homeodomain-like
PROSITE profilePS500908.45558122IPR017877Myb-like domain
SMARTSM007170.001162124IPR001005SANT/Myb domain
CDDcd122037.31E-2964129No hitNo description
PfamPF138377.2E-2165150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MYLSEKPRPI DFYKEEGARD MMIEVVSNGD LAPPPPHHPP PMILGESSGE DPEVEIKAPK  60
KRAETWVQDE TRSLIGLRRE MDALFNTSKS NKHLWEQISA KMREKGFDRS PTMCTDKWRN  120
LLKEFKKAKH QDRGGSGSAK MSYYKEIDEI LRERSKNVQY KSPTPPPKVD SFMQFADKGI  180
DDTSISFGPV EATGRPTLNL ERSLDHDGHP LAITTADAVA ASGVPPWNWR ETSGNGGESQ  240
SCCGRVISVK WGDYTRRIGI DGTPEAIKEA IRAAFRLRTK RTFWLEDEDQ IIRSIDREMP  300
IGSYTLHLDE GMAIKLCLYD ESEHLPVHTE DKVFYTENDY RDFLTRRGWV CLREFDGYRN  360
IDNLDDLRPG AIYRGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4860146186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G258700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2852650.0EU285265.1 Glycine max GT-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163722.10.0hypothetical protein PHAVU_001G258700g
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLV7D3B00.0V7D3B0_PHAVU; Uncharacterized protein
STRINGXP_007163722.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]