PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G261300.1
Common NamePHAVU_001G261300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YC
Protein Properties Length: 202aa    MW: 22103.1 Da    PI: 5.1509
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G261300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC506.5e-167921397
               NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                        +    + e+P  r+kki+  dedvk++s+ea  l+s++ elf+  l+ +s + a e+kr+t++   +  av+r + + dfl+d+ p
  Phvul.001G261300.1  7 NGASIQLEFPKGRVKKIMVLDEDVKRVSSEALFLVSRSTELFLQFLAEKSANVAIEKKRKTVNLEHVRIAVQRHQpTRDFLLDDLP 92
                        44455789***************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-20978IPR009072Histone-fold
SuperFamilySSF471131.42E-191192IPR009072Histone-fold
PfamPF008089.3E-191477IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAEEEENGAS IQLEFPKGRV KKIMVLDEDV KRVSSEALFL VSRSTELFLQ FLAEKSANVA  60
IEKKRKTVNL EHVRIAVQRH QPTRDFLLDD LPPPSRPAKL GEPTQPVSRP KLDAPPPGTR  120
RIDQFFRKPE PQNLAKAQST ENPAQAQAQP PEIPAQAQSP EIPAQAQPPE VAAQAQSPEI  180
VAQALSPEIP AQAQSPVPVD E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G261300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-151AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163752.11e-138hypothetical protein PHAVU_001G261300g
TrEMBLV7D3D51e-136V7D3D5_PHAVU; Uncharacterized protein
STRINGXP_007163752.11e-137(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-50nuclear factor Y, subunit C13