PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G263000.1
Common NamePHAVU_001G263000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CAMTA
Protein Properties Length: 967aa    MW: 108644 Da    PI: 5.0227
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G263000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1163.14.8e-51141293117
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e +krwlk+ e++ iL n++  elt++++++p  gsl L+n++++r+frkDG++w+kk+dg+tv E+he+LKvg+ e+l+cyYah+een+
  Phvul.001G263000.1  14 QEaRKRWLKPVEVLCILRNYDMCELTHQPPHQPAGGSLYLFNKRVTRFFRKDGHNWRKKRDGRTVGEAHERLKVGNEEILNCYYAHGEENR 104
                         5669*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylev 117
                         tfqrr+yw+Le e+e+ivlvhy+e+
  Phvul.001G263000.1 105 TFQRRSYWILEPEYEHIVLVHYRET 129
                         ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.1669135IPR005559CG-1 DNA-binding domain
SMARTSM010766.9E-6612130IPR005559CG-1 DNA-binding domain
PfamPF038592.3E-4515128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.6E-6365454IPR013783Immunoglobulin-like fold
SuperFamilySSF812966.53E-16367451IPR014756Immunoglobulin E-set
PfamPF018337.3E-6367438IPR002909IPT domain
Gene3DG3DSA:1.25.40.202.2E-15557653IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.592559651IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-15563653IPR020683Ankyrin repeat-containing domain
PfamPF127963.1E-8576653IPR020683Ankyrin repeat-containing domain
CDDcd002043.97E-13579651No hitNo description
SMARTSM002480.0038592621IPR002110Ankyrin repeat
PROSITE profilePS5008811.06592624IPR002110Ankyrin repeat
SMARTSM002481800631660IPR002110Ankyrin repeat
SMARTSM00015190709731IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.291710739IPR000048IQ motif, EF-hand binding site
SMARTSM000150.098771793IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.91E-5771822IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.51773801IPR000048IQ motif, EF-hand binding site
PfamPF006120.0024775792IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0032794816IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.853795819IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4797816IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 967 aa     Download sequence    Send to blast
MPPGLEYNID DLFQEARKRW LKPVEVLCIL RNYDMCELTH QPPHQPAGGS LYLFNKRVTR  60
FFRKDGHNWR KKRDGRTVGE AHERLKVGNE EILNCYYAHG EENRTFQRRS YWILEPEYEH  120
IVLVHYRETS KGKSNSEPVT QLSSGSSLVF SQSHSLYTAQ NPGTSSVFGD SCEPNLNFSS  180
PGSLEVTSEA QALRQLEKEL NINEDSFSER LSEQNDQGQL FVMYSEGQDN SDTYYHDSID  240
DCPDGKEKTI YWTEVLEAFQ PLPVTNIPDQ YVYEAFENEE SLFSSGREMI ANVENNQWLN  300
SNSNNVENSV FPLPQGNNGV KFPLCSLVET PVTISDYYEP FFDQTQIQEP LGGVDSSLTV  360
EQKQKFTIRA VSPEYCYATE TTKVIIIGSF LYHHLDSTWA CMFGDVEVPA EIIQDGVICC  420
EAPSNLVGKV NLCVTSGNRV PCSEVSEFEF RNKTTSCTRC NSLETEDGRS PEDLLLLVRF  480
AEMLHSASTT ESGSHLSTEQ KDSDDSWSHI IDTLLVGTGK SSDTVNWLLE ELLKDKLQHW  540
LSNRSNERDE GTDCSLSKKE QGIIHMVSGL GFEWALNPIL NCGVNINFRD INGWTALHWA  600
ARFGREKMVA SLIASGASAG AVTDPSSQNP SGETAASVAA SHGHKGLAGY LSEVDLTSHL  660
SSLTLTGSKI SKGPSELAAE LTVCSVSKEN LVASEDQVSL KASLDAVRNA AQAAARIQDA  720
FRAHSFRKRK QREAAAAVAR LEGYCISPGC NDDNISVLSA MSKLSSRSLG DCNLAALSIQ  780
KRYRGWKDRK QFLALRQKVV KIQAIVRGYQ ARKQYKIILW AVGIYNKVVL RWRRKRVGIS  840
SVRQEMDSNE EGSDDEDFLN VFRKEKVNAA IEKALKRVLS MVRHDDARHQ YRRLLSLYRQ  900
AKTESESTID EAPLSTSEED VFHIEDDDLN TLLDKVWASE EDGFNMDAFS MIDNDLSQSS  960
WEKYWS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G263000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163775.10.0hypothetical protein PHAVU_001G263000g
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLV7D0820.0V7D082_PHAVU; Uncharacterized protein
STRINGXP_007163775.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]