PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G266300.1
Common NamePHAVU_001G266300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 442aa    MW: 49829.8 Da    PI: 5.8919
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G266300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23e-34151052101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+ye++++++++e++sws+++n+f+v+++ ef++ +Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F k++k+
  Phvul.001G266300.1  15 FLLKTYEMVDESSTDEIVSWSSTNNTFIVWNPAEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPER---------WEFANEDFLKDQKH 96 
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Phvul.001G266300.1  97 LLNNIHRRK 105
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.21E-3411104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.8E-5711104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.8E-3612104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.8E-2915104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-181538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MMMMEGTGST DPAPFLLKTY EMVDESSTDE IVSWSSTNNT FIVWNPAEFS RLLLPTFFKH  60
NNFSSFIRQL NTYGFRKVHP ERWEFANEDF LKDQKHLLNN IHRRKPIHSH SLTQPVVDSE  120
RSAFEEQIQK LSQDNTTIQS NILRFKHLHS AANTHLQDLR LRLDAMEERQ QNLLTVFQKA  180
LHNPALVQHI TRKIESMDLL AYNKKRRLPP QLHDLHLQPL AGNTFVERFG MEFGNVSHQD  240
FSNKLALELS PVVSDTNLVV SCSTQGSNED GERPHKIMLP QIAQTGESLP FQMHSAESPK  300
LDSNYEDGDS YISCLLNLSL ASSPLQAKRN TCTDKSPSLI DCPKFGEGSK FCGNDSKEYD  360
AGASSSKNLN EVTNLAEAPP TAAPVRVNDV FWEQFLTERP GCGDNEGSMS PHKVNAYVAE  420
QDEERSVHGI AGNVMDMDHT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-21610417129Heat shock factor protein 1
5d5v_B4e-21610417129Heat shock factor protein 1
5d5v_D4e-21610417129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G266300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163811.10.0hypothetical protein PHAVU_001G266300g
SwissprotQ94BZ51e-115HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLV7D2Q20.0V7D2Q2_PHAVU; Uncharacterized protein
STRINGXP_007163811.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-113HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]