PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G006500.1
Common NamePHAVU_002G006500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LSD
Protein Properties Length: 144aa    MW: 15041.5 Da    PI: 7.7286
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G006500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.2e-132751125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL YP GA+sV+Ca+C++V
  Phvul.002G006500.1 27 CSGCRNLLLYPVGATSVCCAVCNAV 51
                        ************************9 PP
2zf-LSD143.74.5e-146488125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggC+tlL++ rGA++V+C++C+tV
  Phvul.002G006500.1 64 CGGCHTLLMFIRGATNVQCSCCHTV 88
                        ************************9 PP
3zf-LSD135.41.8e-11102126125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+C  lL+Y +GA+sV+Ca+C +V
  Phvul.002G006500.1 102 CGNCEMLLRYQYGARSVKCAICSFV 126
                         **********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.4E-132454IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-102751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.0E-146190IPR005735Zinc finger, LSD1-type
PfamPF069437.8E-126488IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.4E-999128IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-10102126IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MPVPLAPYPP PPPYTPPPNG AQSQVVCSGC RNLLLYPVGA TSVCCAVCNA VTTVPPPEMA  60
QLVCGGCHTL LMFIRGATNV QCSCCHTVNL ALEANQVAHV NCGNCEMLLR YQYGARSVKC  120
AICSFVTSVG TSTITTSEQK FST*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G006500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1369451e-109BT136945.1 Lotus japonicus clone JCVI-FLLj-13N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156662.14e-99hypothetical protein PHAVU_002G006500g
SwissprotQ93ZB12e-71LOL1_ARATH; Protein LOL1
TrEMBLV7CIF49e-98V7CIF4_PHAVU; Uncharacterized protein
STRINGXP_007156662.11e-98(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-52lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]