PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G022000.1

Common Name

PHAVU_002G022000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 340aa MW: 35873.8 Da PI: 8.6925

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G022000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	69	128	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk+k+s Phvul.002G022000.1 69 ENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSS 128 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	69	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	71	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MIQELLGAAT ATLIAGERKF SINNGGGGGG GGGGGHLLTP PMPSSASPSP SCTTTITTST 60 NTATSSNSEN QNLRCPRCDS SNTKFCYYNN YNLTQPRHFC KTCRRYWTKG GALRNVPIGG 120 GCRKSKSSGM SNSVAKQAAT KMKAVASELG RPQGLFDQEL PQTPILWGSP QNTQLMALLR 180 ATQNQNQNPN PSPVSIAVKR EGNSLGSHSH MVTEPLLANG LLNSTRTSLG YDGVGELPSL 240 GLCSSFWRNN QDQNQQQSNG FVLAEQQSGG VQELYHKLRS SSSVNYCGSD NSPVFLGNMA 300 SSSSLSNILE SSSVSGSEFG CWNPTLSWSD LPTTSGAYP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G022000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095824	0.0	BT095824.1 Soybean clone JCVI-FLGm-19N22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007156842.1	0.0	hypothetical protein PHAVU_002G022000g
TrEMBL	V7CIV4	0.0	V7CIV4_PHAVU; Uncharacterized protein
STRING	XP_007156842.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-33	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Phvul.002G022000.1
Entrez Gene	18636696