PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G024800.1
Common NamePHAVU_002G024800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 733aa    MW: 79344.5 Da    PI: 7.1804
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G024800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.5e-095005371954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Phvul.002G024800.1 500 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 537
                         664559******************************88 PP
2BELL118.14.2e-38360431172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +r e+q++k+kLls+l+e+d+rY++y+eq+q+v++sF+ ++g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Phvul.002G024800.1 360 DRIEHQRRKVKLLSMLDEMDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 431
                         589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-74289429IPR006563POX domain
PfamPF075263.0E-50294428IPR006563POX domain
PROSITE profilePS5007112.568478541IPR001356Homeobox domain
CDDcd000861.97E-12481542No hitNo description
SMARTSM003891.2E-9481545IPR001356Homeobox domain
SuperFamilySSF466893.72E-17483548IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-29484547IPR009057Homeodomain-like
PfamPF059203.7E-18498537IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MSQDFQPGIF SFPNGLERGR VSPQQQIRRD KVRLQGEFGA APLVGIEEEE PVYETAGMLS  60
EMFNFPPTAA AELLEQQPVT ATFRAARQVG EWYGNRQGVN MMMGGLGDSK NQNGVNNNQH  120
QPQHQISSIN ADSAAAMQLF LMNPQTRSPS PPQTHATPSS TLHMLLPNPS SNSLQGFTGS  180
AVGGSFGQFT WVPESAHQQG GVMEGQGLSL SLSSSLEAAK AEELRMGDSG FLFYNHQQGG  240
GGVGAGGSSS STVQFPYKNN SHQQALHLQG VIGHDNNQQG HVGFGSSSLG VVNVLRNTKY  300
VKAAQELLEE FCSVGRGQFK KSKLNRQNSN PNSNPDGGGS SPSSKDAAIP PPPPPLSAAD  360
RIEHQRRKVK LLSMLDEMDR RYNHYCEQMQ MVVNSFDLMM GFGAAVPYTA LAQKAMSRHF  420
RCLKDAITAQ LKQSCELLGE KEGAGASGLT KGETPRLKVL EQSLRQQRAF HQMGMMEQEA  480
WRPQRGLPER SVNILRAWLF EHFLHPYPSD ADKHLLARQT GLSRNQVSNW FINARVRLWK  540
PMVEEMYQQE LKEAENTEER ENNQSNNSNT SGNQAQTPST PGAATTSTAT TAAPPTITTT  600
KPTGKKSNIN ATESDSSLVA MNRQGFSENQ GKQSTTTSTT IMASVSATTS EIAPPGSQCL  660
DSDLPPHRLM ATDDTCRLVT ADFGTTSASA DIGSTLIRFG TAVGDVSLTL GLRHAGNMPE  720
KTPFSVRDFG AI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16487545563Homeobox protein Meis2
3k2a_B2e-16487545563Homeobox protein Meis2
4xrm_A2e-16487545563Homeobox protein Meis2
4xrm_B2e-16487545563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G024800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156875.10.0hypothetical protein PHAVU_002G024800g
SwissprotQ9SW801e-171BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLV7CFF60.0V7CFF6_PHAVU; Uncharacterized protein
STRINGXP_007156875.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-138BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]