PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G027500.1
Common NamePHAVU_002G027500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 518aa    MW: 57903.9 Da    PI: 6.0035
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G027500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.75.7e-841605162374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         +e L+++A+++++++l+ aq +L+rl+++ +sp g+p+qR+a+yf+eAL++ l++      +  +p+ +s  + ++ +  +k+fs +sPi+
  Phvul.002G027500.1 160 IEELIRAADCFDTKQLHVAQVILERLNQRlRSPVGKPLQRAAFYFKEALQSLLSG------SNRTPRISSLVEIVHGIRTFKAFSGISPIP 244
                         679*************************99*************************......5556666666678999999999******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                          fs +t+Nq +l+ +  ++ +H+iDfdi+ G+Q+++L++++a+++ ++p lRiT+v+++e   + e   ++e+La+fA el++++e +++ 
  Phvul.002G027500.1 245 MFSIFTTNQVVLDHA-ACSFMHVIDFDIGLGIQYASLMKEIAEKSTDSPLLRITAVVPEE--YAVESTLVRENLAQFALELRIRIEVDFVP 332
                         *************86.5899**************************************66..8999999********************99 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adh.nsesFlerflealeyysalf 268
                          +++e+l++++ ++  gE++ V l+  ++r l   ++ +    ++L  ++++sP vvv+v+ e    + +  ++sF ++++++leyys+++
  Phvul.002G027500.1 333 LRTFETLSFKAVKLVDGESTTVLLSPVIFRHL---GNAA----AFLADLRRVSPSVVVFVDGEgwadMATaAASSFRRGVVSSLEYYSMML 416
                         99*****************************9...4444....5*****************9977553334777***************** PP

                GRAS 269 dsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                         +sl+a+ +    e+ + +E + l+++i  +v  + +       ++  Wre++  aG+++v+ls++a  qa++ll+k + +g++ve+++++l
  Phvul.002G027500.1 417 ESLDASTAGGGgEWVRRIEMMQLRPKILAAVESSWR-------RMPPWREAFYGAGMRAVQLSQFADFQAECLLAKSQIRGFHVEKRQNEL 500
                         ***66554444499*************999876555.......489********************************************* PP

                GRAS 359 vlgWkdrpLvsvSaWr 374
                         vl W+dr++vs SaWr
  Phvul.002G027500.1 501 VLFWHDRAMVSSSAWR 516
                         ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.97133496IPR005202Transcription factor GRAS
PfamPF035142.0E-81160516IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MRVPVPSSPQ TNPKPTNNVV RTIALPNLNT TGLCYEPTSV LDLCRSPSPG SEKPTDHTVV  60
VTDSQDCLDL DDHALHNLDW DSIMKDLGLH DDSGAHLLKT IPHPDNNNNP CDDFTIAPFE  120
HALEFSTLSD IYSNQNLAFD FNHLVHDFSN HHHNNGFDFI EELIRAADCF DTKQLHVAQV  180
ILERLNQRLR SPVGKPLQRA AFYFKEALQS LLSGSNRTPR ISSLVEIVHG IRTFKAFSGI  240
SPIPMFSIFT TNQVVLDHAA CSFMHVIDFD IGLGIQYASL MKEIAEKSTD SPLLRITAVV  300
PEEYAVESTL VRENLAQFAL ELRIRIEVDF VPLRTFETLS FKAVKLVDGE STTVLLSPVI  360
FRHLGNAAAF LADLRRVSPS VVVFVDGEGW ADMATAAASS FRRGVVSSLE YYSMMLESLD  420
ASTAGGGGEW VRRIEMMQLR PKILAAVESS WRRMPPWREA FYGAGMRAVQ LSQFADFQAE  480
CLLAKSQIRG FHVEKRQNEL VLFWHDRAMV SSSAWRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-2216551524377Protein SCARECROW
5b3h_D2e-2216551524377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G027500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156910.10.0hypothetical protein PHAVU_002G027500g
SwissprotO232101e-166SCL15_ARATH; Scarecrow-like protein 15
TrEMBLV7CFI50.0V7CFI5_PHAVU; Uncharacterized protein
STRINGXP_007156910.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-159GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]