PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G039800.4
Common NamePHAVU_002G039800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family E2F/DP
Protein Properties Length: 245aa    MW: 27234.4 Da    PI: 8.1829
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G039800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP88.25.7e-2890172271
             E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Phvul.002G039800.4  90 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsngastpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 172
                         689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.0E-1003244IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.3E-4785178IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-3589172IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-2591172IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.66E-2292173IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440743.66E-19179241No hitNo description
SMARTSM011389.6E-7179242IPR014889Transcription factor DP, C-terminal
PfamPF087816.2E-18180241IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGIQTQKTFR EEEEEELPCR GTTISGQSMS TSRSVGSPSS RSEQTMATPA SDNTFLRLNN  60
LDIHGDDAGS QGAVAKKKKR GQRTVGGDKS GRGLRQFSMK VCEKVESKGR TTYNEVADEL  120
VAEFADPSNG ASTPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW KGLPRTSLSD  180
IEDLKTERQG LRNRIEKKAS YLQELEDQYI GLQKLIQRNE QLYSSGNAPN GGVSLPFILV  240
QHSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-4083177193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G039800.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937950.0BT093795.1 Soybean clone JCVI-FLGm-17D20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157058.10.0hypothetical protein PHAVU_002G039800g
RefseqXP_007157061.10.0hypothetical protein PHAVU_002G039800g
SwissprotQ9FNY21e-123DPB_ARATH; Transcription factor-like protein DPB
TrEMBLV7CID81e-180V7CID8_PHAVU; Uncharacterized protein
STRINGXP_007157060.11e-170(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-115Transcription factor DP