PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G040500.1
Common NamePHAVU_002G040500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 466aa    MW: 51726.6 Da    PI: 5.106
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G040500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.48.8e-37151072103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw en+n+fvv++  +fa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Phvul.002G040500.1  15 FLSKTYDMVDDPSTDSVVSWGENNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFRKVDPDQ---------WEFANEGFLRGEKQ 96 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i r+ks+
  Phvul.002G040500.1  97 LLKSISRRKSA 107
                         ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.06E-3311104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.8E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3711104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.7E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEGASWNTTV SVAPFLSKTY DMVDDPSTDS VVSWGENNNT FVVWNVPQFA TDILPKHFKH  60
NNFSSFVRQL NTYGFRKVDP DQWEFANEGF LRGEKQLLKS ISRRKSAQVN GSQQPSQVQK  120
SSVRACVEVG KFGLEEEVEI LKRDKNVLMQ ELVRLRQKQQ VTDNQLQNVG QRVQSMEQRQ  180
QQMMSFLAKA MQSPGFLAQF VQQQNESNKH ITGGSKKRRL HRQEKDNLAT NSLHSGLDGH  240
VVKYQSSIND AAKSLFRQIL QINNSTATQS SIKNPDVFLI DDIPSAIASD SSSSSTQVSN  300
VTLSTVPSVS ELTSMEVDSQ FPVNCMPSIS EVQSPLDFCQ SQGVETESSL VNHNLNDVGA  360
GSRNMGEIDV PSVSDGPHTV EAGYSSPDAD GISQLPDIDD EFWELFFRPS PLTGDTEEIK  420
FSSLGCGLTE DHGLPLEREN EKKNVDKMQH VDKLTKQMGL LASKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-251110425129Heat shock factor protein 1
5d5v_B5e-251110425129Heat shock factor protein 1
5d5v_D5e-251110425129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G040500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157072.10.0hypothetical protein PHAVU_002G040500g
SwissprotQ84T611e-140HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLV7CJI20.0V7CJI2_PHAVU; Uncharacterized protein
STRINGXP_007157072.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-118heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]