PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G056300.1
Common NamePHAVU_002G056300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 291aa    MW: 32637.6 Da    PI: 7.5729
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G056300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-18127181256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Phvul.002G056300.1 127 RKKLRLSKDQSIILEESFKEHSTLNPKQKLALAKQLGLRARQVEVWFQNRRARTK 181
                         677889***********************************************98 PP
2HD-ZIP_I/II124.74.2e-40127216191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlsk+q+ +LEesF+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Phvul.002G056300.1 127 RKKLRLSKDQSIILEESFKEHSTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-TL 216
                         69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.1E-283100IPR006712HD-ZIP protein, N-terminal
PROSITE profilePS5007116.779123183IPR001356Homeobox domain
SMARTSM003893.4E-15125187IPR001356Homeobox domain
SuperFamilySSF466891.2E-17126191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-17127181IPR009057Homeodomain-like
PfamPF000467.2E-16127181IPR001356Homeobox domain
CDDcd000861.45E-14127184No hitNo description
PRINTSPR000312.4E-5154163IPR000047Helix-turn-helix motif
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
PRINTSPR000312.4E-5163179IPR000047Helix-turn-helix motif
SMARTSM003401.2E-26183226IPR003106Leucine zipper, homeobox-associated
PfamPF021835.6E-11183216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTAEKEDLGL SLSLSFPHNA PTPLHLNLLS TSTYSSSPPS HNPHKPSWNQ PFTSSGEAGS  60
FLRGIDVNRL PSMLDCEEEA GVSSPNSTVS SVSEKRSERE ANGEEEHDTE RGCFRGISDE  120
EEGETCRKKL RLSKDQSIIL EESFKEHSTL NPKQKLALAK QLGLRARQVE VWFQNRRART  180
KLKQTEVDCE FLKRCCENLT EENRRLQKEV QELRTLKLSP QFYMHMTPPT TLTMCPSCER  240
VAVPPSSAVD AATRHHHVPQ THSRPFPIGP WATSAASISH RPFDALRPRS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175183RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G056300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX924890.0X92489.1 G.max mRNA for homeobox-leucine zipper protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157265.10.0hypothetical protein PHAVU_002G056300g
SwissprotP466011e-111HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLV7CGL40.0V7CGL4_PHAVU; Uncharacterized protein
STRINGXP_007157265.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.18e-84homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]