PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G056900.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 185aa    MW: 21090.7 Da    PI: 8.4893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G056900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.54.2e-201562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd++l+++++ +G ++Wkt+a + g++R++k+c++rw++yl
  Phvul.002G056900.1 15 RGAWTAEEDQKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYL 62
                        89********************************************97 PP
2Myb_DNA-binding51.91.7e-1668112147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ + eE++l+ +++k+lG++ W++Ia++++ gRt++++k++w++ 
  Phvul.002G056900.1  68 RGNISVEEEDLITRLHKLLGNR-WSLIAKRLP-GRTDNEIKNYWNTC 112
                         78999*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.0321066IPR017930Myb domain
SMARTSM007174.8E-161464IPR001005SANT/Myb domain
SuperFamilySSF466891.06E-2914109IPR009057Homeodomain-like
PfamPF002496.6E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-231669IPR009057Homeodomain-like
CDDcd001671.89E-111762No hitNo description
PROSITE profilePS5129419.42467117IPR017930Myb domain
SMARTSM007175.1E-1467115IPR001005SANT/Myb domain
PfamPF002498.4E-1568112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2570117IPR009057Homeodomain-like
CDDcd001675.91E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAPQNNETPK KTNNRGAWTA EEDQKLAQCI EIHGAKRWKT VAIKSGLNRC GKSCRLRWLN  60
YLRPNIKRGN ISVEEEDLIT RLHKLLGNRW SLIAKRLPGR TDNEIKNYWN TCLCKKVNHH  120
TKVKPETSMA QPTHSTQNTE EKVAAENKEG TDHDDGSGDS EVNFDVNEFF NFSIEGPYAL  180
DWVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-29151174105MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-291411726128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G056900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150438e-95AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516658.11e-115transcription factor MYB32
RefseqXP_028215100.11e-115transcription factor MYB32-like
SwissprotP102902e-48MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A445M5V21e-113A0A445M5V2_GLYSO; Anthocyanin regulatory C1 protein
TrEMBLK7K4Z01e-113K7K4Z0_SOYBN; Uncharacterized protein
STRINGGLYMA01G41610.21e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.12e-50myb domain protein 23
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]