PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G058900.1
Common NamePHAVU_002G058900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 297aa    MW: 33186.7 Da    PI: 6.5995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G058900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012426123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC+ C+++F +   L  H++ H
  Phvul.002G058900.1  4 HKCKLCSRTFANGRALGGHMKAH 26
                        79******************998 PP
2zf-C2H212.50.00046199221123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C k+F+++  L +H + +
  Phvul.002G058900.1 199 HQCESCEKTFRSSRALGSHRSIC 221
                         79*****************9876 PP
3zf-C2H211.70.00078231253123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C+k+F +   L  H r+H
  Phvul.002G058900.1 231 FECPFCSKVFGSGQALGGHKRSH 253
                         89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.83E-5329No hitNo description
PfamPF139121.6E-7327IPR007087Zinc finger, C2H2
SMARTSM003550.036426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-8197253No hitNo description
SMARTSM0035569199219IPR015880Zinc finger, C2H2-like
PfamPF139120.0069199218IPR007087Zinc finger, C2H2
SMARTSM003550.028231253IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-11231253IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097231253IPR007087Zinc finger, C2H2
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MERHKCKLCS RTFANGRALG GHMKAHLATL PLPPKPQRLH HSLNTFSSNS SSRAELEDDD  60
NEEEDEEEQE KALINYALRE NPKKCFRLAD PEFNSGSVVQ DRESETESKN PTRRRSKRPR  120
RPANSQPKAR PKLSFMESPE PVSSVSDTSP EEDVAMCLMM LSRDRWSKNT NAAVGSDALE  180
EEEERSVEEI KLRRVRRKHQ CESCEKTFRS SRALGSHRSI CGGSGNDSKI FECPFCSKVF  240
GSGQALGGHK RSHLVPSSSS TANDSTRFKD SFIDLNLPAP TEEDDLSVVS DAQFDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G058900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157307.10.0hypothetical protein PHAVU_002G058900g
TrEMBLV7CK740.0V7CK74_PHAVU; Uncharacterized protein
STRINGXP_007157307.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.14e-38C2H2-like zinc finger protein